Peer-reviewed research output
Complete list of articles across genomics, host-pathogen interaction modeling, and AI-enabled bioinformatics, with filters to explore work by year or topic.
Discovery of potential haplotypes associated with varying levels of vicine content due to the InDel1.4 and a coding-SNP in the VC1 gene in faba bean (Vicia faba L.)
Sadhan Debnath and Wricha Tyagi and Mayank Rai and Kuldeep Singh and Sujan Majumder and Duhan, N. and Ng Tombisana Meetei
Plant Gene • 41 • 100481 • 2025
Comparative miRNome and transcriptome analyses reveal the expression of novel miRNAs in the panicle of rice implicated in sustained agronomic performance under terminal drought stress
Kaur, S. and Seem, K and Duhan, N. and Kumar, S and Kaundal, R and Mohapatra, T
Planta • 259(6) • 128 • 2024
RSLpred2: An integrated web server for the annotation of Rice proteome subcellular localization using deep learning
Duhan, N. and Kaundal, R.
Rice • Accepted • 2024
Geographical Expansion of Avian Metapneumovirus Subtype B: First Detection and Molecular Characterization of Avian Metapneumovirus Subtype B in US Poultry
Luqman, M. and Duhan, N. and Temeeyasen, G. and Selim, M. and Jangra, S. and Mor, S.K.
Viruses • 16(4) • 508 • 2024
Navigating the human-monkeypox virus interactome: HuPoxNET atlas reveals functional insights
Kataria, Raghav and Duhan, N and Kaundal, Rakesh
Frontiers in Microbiology • 15 • 2024
AtSubP-2.0: An integrated web server for the annotation of Arabidopsis proteome subcellular localization using deep learning
Duhan, N. and Kaundal, R.
Plant Genome • Accepted • 2024
Transcriptome and Physio-Biochemical Profiling Reveals Differential Responses of Rice Cultivars at Reproductive-Stage Drought Stress
Kaur, S. and Seem, K. and Duhan, N. and Kumar, S. and Kaundal, R. and Mohapatra, T.
International Journal of Molecular Sciences • 24(2) • 1002 • 2023
HuCoPIA: An Atlas of Human vs. SARS-CoV-2 Interactome and the Comparative Analysis with Other Coronaviridae Family Viruses
Duhan, N. and Kaundal, R.
Viruses • 15(2) • 492 • 2023
ranchSATdb: a Genome-wide Simple Sequence Repeat (SSR) Markers Database of Livestock Species for Mutant Germplasm Characterization and Improving Farm Animal Health.
Duhan, N. and Kaur, S. and Kaundal, R.
Genes • 14(2) • 1481 • 2023
Increased expression of pro-inflammatory cytokines at the fetal--maternal interface in bovine pregnancies produced by cloning
Rutigliano, H. M. and Thomas, A. J. and Umbaugh, J. J. and Wilhelm, A. and Sessions, B. R. and Kaundal, R. and Duhan, N. and Hicks, B. A. and Schlafer, D. H. and White, K. L. and Davis C. J.
American Journal of Reproductive Immunology • 87(3) • e13520 • 2022
Computational systems biology of Alfalfa--bacterial blight host-pathogen interactions: uncovering the complex molecular networks for developing durable disease resistant crop
Kataria, R. and Duhan, N. and Kaundal, R.
Frontiers in Plant Science • 12 • 807354 • 2022
deepNEC: a novel alignment-free tool for the identification and classification of nitrogen biochemical network-related enzymes using deep learning
Duhan, N. and Norton, J. M. and Kaundal, R.
Briefings in Bioinformatics • 23(3) • bbac071 • 2022
deepHPI: a comprehensive deep learning platform for accurate prediction and visualization of host--pathogen protein--protein interactions
Kaundal, R. and Loaiza, C. D. and Duhan, N. and Flann, N.
Briefings in Bioinformatics • 23(3) • bbac125 • 2022
TritiKBdb: A Functional Annotation Resource for Deciphering the Complete Interaction Networks in Wheat-Karnal Bunt Pathosystem
Duhan, N. and Kataria, R. and Kaundal, R.
International Journal of Molecular Sciences • 23(13) • 7455 • 2022
Heat and drought induced transcriptomic changes in barley varieties with contrasting stress response phenotypes
Mahalingam, R. and Duhan, N. and Kaundal, R. and Smertenko, A. and Nazarov, T. and Bregitzer, P.
Frontiers in Plant Science • 13 • 4652 • 2022
In silico prediction of host--pathogen protein interactions in melioidosis pathogen Burkholderia pseudomallei and human reveals novel virulence factors and their targets
Loaiza, C. D and Duhan, N.$ and Lister, M. and Kaundal, R.
Briefings in Bioinformatics • 22(3) • bbz162 • 2021
Transcriptional profiling of two contrasting genotypes uncovers molecular mechanisms underlying salt tolerance in alfalfa
Kaundal, R. and Duhan, N. and Acharya, B. R. and Pudussery, M. V. and Ferreira, J. FS. and Suarez, D. L. and Sandhu, D.
Scientific Reports • 11(1) • 5210 • 2021
GreeningDB: A Database of Host--Pathogen Protein--Protein Interactions and Annotation Features of the Bacteria Causing Huanglongbing HLB Disease
Loaiza, C. D. and Duhan, N. and Kaundal, R.
International Journal of Molecular Sciences • 22(19) • 10897 • 2021
LegumeSSRdb: A Comprehensive Microsatellite Marker Database of Legumes for Germplasm Characterization and Crop Improvement
Duhan, N. and Kaundal, R.
International Journal of Molecular Sciences • 22(21) • 11350 • 2021
citSATdb: genome-wide simple sequence repeat (SSR) marker database of Citrus species for germplasm characterization and crop improvement
Duhan, N. and Meshram, M. and Loaiza, C. D. and Kaundal, R.
Genes • 11(12) • 1486 • 2020
Computational identification of maize miRNA and their gene targets involved in biotic and abiotic stresses
Kaur, K. and Duhan, N. and Singh, J. and Kaur, G. and Vikal, Y.
Journal of biosciences • 45 • 1--17 • 2020
EPIGENOMICS: ROLE, APPROACHES AND APPLICATIONS IN PLANTS
Malhotra, P. K. and Verma, G. and Sidhu, G. S. and Duhan, N.
JAPS, Journal of Animal and Plant Sciences • 30(5) • 1071--1082 • 2020
pySeqRNA: an automated Python package for RNA sequencing data analysis
Duhan, N. and Kaundal, R.
f1000research • 2020
Developmental and molecular changes underlying the vernalization-induced transition to flowering in Aquilegia coerulea (James)
Sharma, B. and Batz, T. A. and Kaundal, R. and Kramer, E. M. and Sanders, U. R. and Mellano, V. J. and Duhan, N. and Larson, R. B.
Genes • 10(10) • 734 • 2019
In silico identification and validation of potential microRNAs in Kinnow Mandarin (Citrus reticulata Blanco)
Mohanpuria, P. and Duhan, N. and Sarao, N. K. and Kaur, M. and Kaur, M.
Interdisciplinary Sciences: Computational Life Sciences • 10 • 762--770 • 2018
Comparative Structure Modeling of Glyoxalase II Protein of Oryza sativa
Jhinjer, R. K. and Duhan, N. and Chhuneja, P.
Int. J. Curr. Microbiol. App. Sci • 6(8) • 1380--1387 • 2017
In silico identification and characterization of potential miRNAs from Capsicum annum.
Duhan, N. and Sarao, N.K. and Mohanpuria, P. and Sidhu, M.K.
HortFlora Research Spectrum • 5(4) • 306--309 • 2016
Computational identification and characterization of potential miRNAs from Asiatic cotton (Gossypium arboreum L.)
Mohanpuria, P. and Sarao, N. K. and Duhan, N. and Brar, G. and Kaur, A. and Singh, K.
Crop Improv • 40(2) • 121--128 • 2013
Identification of miRNAs in C. roseus and their potential targets
Omer, A. and Singh, S. and Duhan, N.
Bioinformation • 8(2) • 75 • 2012