Publications & Scientific Output
Articles published in leading journals including Briefings in Bioinformatics, Frontiers in Cellular & Infection Microbiology, Pathogens, Viruses, and Planta.
Targeted Amplicon Sequencing Resolves Dual Emergence and Molecular Epidemiology of Avian Metapneumovirus Subtypes A and B
Naveen Duhan (First & Co-Corresponding Author), M. Selim, S.K. Mor, et al.
Whole-Genome Sequencing Reveals Entry- and Replication-Linked Signatures of Emerging PRRSV-2 L1C Lineages in US Swine
Naveen Duhan, J. Nadipelly, et al.
AtSubP-2.0: An integrated web server for the annotation of Arabidopsis proteome subcellular localization using deep learning
Naveen Duhan, R. Kaundal
Isolation and Molecular Characterization of Avian Metapneumovirus Subgroup B Virus from Commercial Turkeys in the Midwest
M. Selim, Naveen Duhan, S. Jangra, S.K. Mor
Geographic Distribution and ORF5-Based Lineage Classification of Porcine Reproductive and Respiratory Syndrome Virus-2 in South Dakota Swine
J. Nadipelly, Naveen Duhan, S. Jangra, et al.
Discovery of potential haplotypes associated with varying levels of vicine content due to the InDel1.4 and a coding-SNP in the VC1 gene in faba bean (Vicia faba L.)
Sadhan Debnath and Wricha Tyagi and Mayank Rai and Kuldeep Singh and Sujan Majumder and Duhan, N. and Ng Tombisana Meetei
Comparative miRNome and transcriptome analyses reveal the expression of novel miRNAs in the panicle of rice implicated in sustained agronomic performance under terminal drought stress
Kaur, S. and Seem, K and Duhan, N. and Kumar, S and Kaundal, R and Mohapatra, T
RSLpred2: An Integrated Web Server for the Annotation of Rice Proteome Subcellular Localization Using Deep Learning
Duhan, N. and Kaundal, R.
Geographical Expansion of Avian Metapneumovirus Subtype B: First Detection and Molecular Characterization of Avian Metapneumovirus Subtype B in US Poultry
Luqman, M. and Duhan, N. and Temeeyasen, G. and Selim, M. and Jangra, S. and Mor, S.K.
Navigating the human-monkeypox virus interactome: HuPoxNET atlas reveals functional insights
Kataria, Raghav and Duhan, N and Kaundal, Rakesh
PRGminer: Harnessing deep learning for the prediction of resistance genes involved in plant defense mechanisms
Naveen Duhan, R. Kaundal
Transcriptome and Physio-Biochemical Profiling Reveals Differential Responses of Rice Cultivars at Reproductive-Stage Drought Stress
Kaur, S. and Seem, K. and Duhan, N. and Kumar, S. and Kaundal, R. and Mohapatra, T.
HuCoPIA: An Atlas of Human vs. SARS-CoV-2 Interactome and the Comparative Analysis with Other Coronaviridae Family Viruses
Duhan, N. and Kaundal, R.
ranchSATdb: a Genome-wide Simple Sequence Repeat (SSR) Markers Database of Livestock Species for Mutant Germplasm Characterization and Improving Farm Animal Health.
Duhan, N. and Kaur, S. and Kaundal, R.
Increased expression of pro-inflammatory cytokines at the fetal--maternal interface in bovine pregnancies produced by cloning
Rutigliano, H. M. and Thomas, A. J. and Umbaugh, J. J. and Wilhelm, A. and Sessions, B. R. and Kaundal, R. and Duhan, N. and Hicks, B. A. and Schlafer, D. H. and White, K. L. and Davis C. J.
Computational systems biology of Alfalfa--bacterial blight host-pathogen interactions: uncovering the complex molecular networks for developing durable disease resistant crop
Kataria, R. and Duhan, N. and Kaundal, R.
deepNEC: a novel alignment-free tool for the identification and classification of nitrogen biochemical network-related enzymes using deep learning
Duhan, N. and Norton, J. M. and Kaundal, R.
deepHPI: a comprehensive deep learning platform for accurate prediction and visualization of host--pathogen protein--protein interactions
Kaundal, R. and Loaiza, C. D. and Duhan, N. and Flann, N.
TritiKBdb: A Functional Annotation Resource for Deciphering the Complete Interaction Networks in Wheat-Karnal Bunt Pathosystem
Duhan, N. and Kataria, R. and Kaundal, R.
Heat and drought induced transcriptomic changes in barley varieties with contrasting stress response phenotypes
Mahalingam, R. and Duhan, N. and Kaundal, R. and Smertenko, A. and Nazarov, T. and Bregitzer, P.
In silico prediction of host--pathogen protein interactions in melioidosis pathogen Burkholderia pseudomallei and human reveals novel virulence factors and their targets
Loaiza, C. D and Duhan, N.\textsuperscript\$ and Lister, M. and Kaundal, R.
Transcriptional profiling of two contrasting genotypes uncovers molecular mechanisms underlying salt tolerance in alfalfa
Kaundal, R. and Duhan, N. and Acharya, B. R. and Pudussery, M. V. and Ferreira, J. FS. and Suarez, D. L. and Sandhu, D.
GreeningDB: A Database of Host--Pathogen Protein--Protein Interactions and Annotation Features of the Bacteria Causing Huanglongbing HLB Disease
Loaiza, C. D. and Duhan, N. and Kaundal, R.
LegumeSSRdb: A Comprehensive Microsatellite Marker Database of Legumes for Germplasm Characterization and Crop Improvement
Duhan, N. and Kaundal, R.
citSATdb: genome-wide simple sequence repeat (SSR) marker database of Citrus species for germplasm characterization and crop improvement
Duhan, N. and Meshram, M. and Loaiza, C. D. and Kaundal, R.
Computational identification of maize miRNA and their gene targets involved in biotic and abiotic stresses
Kaur, K. and Duhan, N. and Singh, J. and Kaur, G. and Vikal, Y.
EPIGENOMICS: ROLE, APPROACHES AND APPLICATIONS IN PLANTS
Malhotra, P. K. and Verma, G. and Sidhu, G. S. and Duhan, N.
pySeqRNA: an automated Python package for RNA sequencing data analysis
Duhan, N. and Kaundal, R.
Developmental and molecular changes underlying the vernalization-induced transition to flowering in Aquilegia coerulea (James)
Sharma, B. and Batz, T. A. and Kaundal, R. and Kramer, E. M. and Sanders, U. R. and Mellano, V. J. and Duhan, N. and Larson, R. B.
In silico identification and validation of potential microRNAs in Kinnow Mandarin (Citrus reticulata Blanco)
Mohanpuria, P. and Duhan, N. and Sarao, N. K. and Kaur, M. and Kaur, M.
Comparative Structure Modeling of Glyoxalase II Protein of Oryza sativa
Jhinjer, R. K. and Duhan, N. and Chhuneja, P.
In silico identification and characterization of potential miRNAs from Capsicum annum.
Duhan, N. and Sarao, N.K. and Mohanpuria, P. and Sidhu, M.K.
Computational identification and characterization of potential miRNAs from Asiatic cotton (Gossypium arboreum L.)
Mohanpuria, P. and Sarao, N. K. and Duhan, N. and Brar, G. and Kaur, A. and Singh, K.
Identification of miRNAs in C. roseus and their potential targets
Omer, A. and Singh, S. and Duhan, N.