Software packages and web resources
All bioinformatics tools, databases, and web servers developed or maintained across research programs.
miPyRNA
An automated Python package for small RNA sequencing data analysis.
SNVguru
An automated Python package for single nucleotide variation (SNV) analysis.
pySeqRNA
An automated Python package for next-generation sequencing data analysis.
MetaNextViro
GitHub repository for MetaNextViro.
TagSeq
GitHub repository for TagSeq.
MINpred
A standalone alignment-free deep learning based tool for nitrogen mineralization enzyme classification.
deepNEC
A standalone alignment-free deep learning based tool for nitrogen metabolism enzyme classification.
HPInet
databaseA cereal crops and pathogen protein-protein interaction database.
HuPoxNET
databaseA database for human-monkeypox virus interactome.
myDockDB
databaseA multiple myeloma proteins and natural compounds docking web resource.
pySeqRNA
webserverComplete documentation website for pySeqRNA package.
ranchSATdb
databaseA database of ranch animals microsatellite markers.
TritiKBdb
databaseA host-pathogen interaction database for understanding Karnal Bunt disease infection mechanisms in wheat.
HuCoPIA
databaseAn atlas of human vs. SARS-CoV-2 interactome and comparative analysis with other Coronaviridae family viruses.
deepNEC
webserverAn integrated web server platform for the prediction of nitrogen metabolism-related enzymes using deep learning.
deepHPI
webserverA deep learning framework for the prediction of host-pathogen protein interactions and visualization.
GreeningDB
databaseA database of host-pathogen interactions and comparative omics of citrus and citrus greening disease (HLB).
covidTracker
webserverA COVID-19 disease infection statistics tracker.
legumeSSRdb
databaseA legume species microsatellite markers database.
citSATdb
databaseA citrus species microsatellite markers database.
PRGminer
webserverDeep learning based PR-genes prediction.