Research & Innovation
Advancing Bioinformatics Through Computational Innovation
My research focuses on developing cutting-edge computational methods, machine learning models, and bioinformatics tools to analyze complex biological data, particularly in genomics, transcriptomics, epigenomics, and metagenomics. I am passionate about integrating multi-omics data to improve plant and animal health, leveraging AI-driven computational modeling, and exploring host-pathogen interactions through systems biology approaches. With over a decade of experience in bioinformatics, I have developed NGS data analysis pipelines, prediction tools, and databases while collaborating with researchers across institutions. At South Dakota State University, I aim to establish a strong, externally funded research program, foster interdisciplinary collaborations, and mentor students in computational biology and bioinformatics. My work is driven by the goal of bridging the gap between data and discovery, ultimately contributing to advancements in agriculture, medicine, and environmental science. I plan to seek funding from agencies such as NIH, NSF, USDA, DOE, and private foundations to support these initiatives.

Research Focus Areas
Multi-omics Data Integration
Developing cutting-edge computational methods to integrate and analyze diverse biological data types including genomics, transcriptomics, proteomics, and metabolomics. Our research focuses on creating novel algorithms that enable comprehensive understanding of biological systems at multiple levels.
Technologies & Tools
AI in Genomics
Pioneering the application of artificial intelligence and deep learning in genomic research. Our work focuses on developing interpretable AI models that can predict gene function, identify regulatory elements, and understand genetic variations associated with complex traits and diseases.
Technologies & Tools
Systems Biology
Investigating complex biological systems through advanced computational modeling. Our research focuses on understanding cellular processes, metabolic pathways, and gene regulatory networks to unravel the complexity of biological systems.
Technologies & Tools
Bioinformatics Tools Development
Creating innovative software solutions and databases that empower researchers across disciplines. Our focus is on developing user-friendly, scalable, and efficient tools that facilitate biological data analysis and interpretation.
Technologies & Tools
Featured Research Projects
deepNEC
Deep Learning in Genomics
A deep learning framework for predicting nitrogen metabolism enzymes from protein sequences. The model achieves state-of-the-art performance in enzyme classification and provides interpretable insights into protein structure-function relationships.
pySeqRNA
RNA-Seq Analysis Pipeline
HuCoPIA
Host-Pathogen Interactions
Let's Collaborate
I'm always open to new research collaborations and opportunities to apply computational approaches to solve complex biological problems. Whether you're working on genomics, proteomics, or systems biology, I'd love to discuss how we can work together.